Rotates the data in such a way that the correlation with the first
naxes axes is maximized.
Usage
# S4 method for dimRedResult
maximize_correlation(
object,
naxes = ncol(object@data@data),
cor_method = "pearson"
)Arguments
- object
A dimRedResult object
- naxes
the number of axes to optimize for.
- cor_method
which correlation method to use
Details
Methods that do not use eigenvector decomposition, like t-SNE often
do not align the data with axes according to the correlation of
variables with the data. maximize_correlation uses the
optimx package to rotate the data in such a
way that the original variables have maximum correlation with the
embedding axes.