Calculate the correlation between the distance matrices in high and low dimensioal space.
Usage
# S4 method for dimRedResult
cophenetic_correlation(object, d = stats::dist, cor_method = "pearson")Arguments
- object
of class dimRedResult
- d
the distance function to use.
- cor_method
The correlation method.
See also
Other Quality scores for dimensionality reduction:
AUC_lnK_R_NX,dimRedResult-method,
LCMC,dimRedResult-method,
Q_NX,dimRedResult-method,
Q_global,dimRedResult-method,
Q_local,dimRedResult-method,
R_NX,dimRedResult-method,
distance_correlation,dimRedResult-method,
mean_R_NX,dimRedResult-method,
plot_R_NX(),
quality,dimRedResult-method,
reconstruction_error,dimRedResult-method,
reconstruction_rmse,dimRedResult-method,
total_correlation,dimRedResult-method